Scaffold Ga0074475_10279528

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074475_10279528

Scaffold Ga0074475_10279528

Overview

Basic Information
Taxon OID	3300005828 Open in IMG/M
Scaffold ID	Ga0074475_10279528 Open in IMG/M
Source Dataset Name	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.182_BBI
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1817
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Ilwaco, Washington, USA
Coordinates	Lat. (^o)	46.30247	Long. (^o)	-123.03645	Alt. (m)		Depth (m)	.02
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105215	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074475_102795282	F105215	AGGAG	MYIKTDPKNSGGSSRTLLFHQDPDIRLDAALQLGGDTNRIADQRLALEALTTALEDPCSTVQEAVLQSLMRMSVKNG*

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