Scaffold Ga0074479_10392262

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074479_10392262

Scaffold Ga0074479_10392262

Overview

Basic Information
Taxon OID	3300005829 Open in IMG/M
Scaffold ID	Ga0074479_10392262 Open in IMG/M
Source Dataset Name	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1280
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Cathlamet Bay
Coordinates	Lat. (^o)	46.208333	Long. (^o)	-123.6925	Alt. (m)		Depth (m)	.02
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064146	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074479_103922621	F064146	GGA	MVIRTLVAALAFTLALAASGPAMGQSGVEIETAAPGPTPKFEIIRPEAPGSEITRPRDADFYSTYGDPVINYDPAFIAPFTKETETGRMGLAGWGSPVGGVTGDGPMNTRQAGWLSFGFAITWGGPPRTPAVAPVSAPR*

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