NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074479_10425601

Scaffold Ga0074479_10425601


Overview

Basic Information
Taxon OID3300005829 Open in IMG/M
Scaffold IDGa0074479_10425601 Open in IMG/M
Source Dataset NameMicrobial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameCathlamet Bay
CoordinatesLat. (o)46.208333Long. (o)-123.6925Alt. (m)Depth (m).02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068264Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0074479_104256012F068264GAGGMKLTDIKTEDVLAGKCWILEPGGDEANPGVRETIGYASEDIGLFSAVVKLADGSEHTALVVKSFPQGGDDIDIYIHTKFGWMNIHAPGFLRALGKYSHDMFPFDYFLANPWKGGKQPEPDKASPHNKIFRETSVRIKGMPAGNKK*

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