Scaffold Ga0074473_11071228

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074473_11071228

Scaffold Ga0074473_11071228

Overview

Basic Information
Taxon OID	3300005830 Open in IMG/M
Scaffold ID	Ga0074473_11071228 Open in IMG/M
Source Dataset Name	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1222
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Astoria, Oregon, USA
Coordinates	Lat. (^o)	46.17784	Long. (^o)	-123.85335	Alt. (m)		Depth (m)	.02
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001384	Metagenome / Metatranscriptome	709	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074473_110712281	F001384	AGGAGG	MADIRGVGKKITYSEDNPISAELEEFRKSRDNIKRPPKDDEERERLARWLGHRGRDELEITVGTACYAMSHFEMDADWRHHLGEHIGTEAGHGWGYIRQANAIDPRRDHSKPDPEFERQYGLTPRIEHHQIMKRDFLSYIFSGNLWPYGHCTAASIQSIQITTPKLLDFEERVVHAEERTHHDAILQKIHDYVWEQIDIYGEAPIRRRIGEIETQALNSRPRTVFDPPRRDFLRKYFNVPVDNVRYFPAWREYLYLNVLGFPPEPVHIENWPAEVPQPKAGA*

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