NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074471_10783415

Scaffold Ga0074471_10783415


Overview

Basic Information
Taxon OID3300005831 Open in IMG/M
Scaffold IDGa0074471_10783415 Open in IMG/M
Source Dataset NameMicrobial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28830
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (30.00%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameAstoria, Oregon, USA
CoordinatesLat. (o)46.17469Long. (o)-123.84933Alt. (m)Depth (m).06
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F001338Metagenome / Metatranscriptome719Y
F001923Metagenome / Metatranscriptome617Y
F002038Metagenome / Metatranscriptome600Y
F003583Metagenome / Metatranscriptome478Y
F005588Metagenome / Metatranscriptome395Y
F014261Metagenome264Y
F053888Metagenome140Y
F058813Metagenome134N
F065732Metagenome / Metatranscriptome127Y
F074555Metagenome119Y
F092032Metagenome107Y
F098917Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0074471_1078341510F098917N/AMTNRDYLRNILTQLAGEVAALRPTLYDSRGIQSDDLNNLHNAINAAAAELDLLDADNIEEAYHIKPIYDRLKAVVAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEANPGDDDAAL*
Ga0074471_1078341511F002038GGAMTPIPAGIERIARTVSGQYALLLLLDGYPYVEMTARKHADYLSDLGLWKRKTHPSLARSQVRFFTLAPTGEIKELTFNR*
Ga0074471_1078341513F074555N/AMSNPNDPLDPMAFLNNAIANAHAQNELMAANARIRQLEGRLEAMREAGDAIWYCVRHAQTIGPDELVEALDGWQEARNHG*
Ga0074471_1078341519F000957N/AMSSFSHLEGMRNLLAEIYEVNERIMTGDICSAKTALASTNVKKILNHYHEALHEDGAVKESLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV*
Ga0074471_1078341521F005588N/AMTIIRPNSKPPFWWLFPWAYACELHRAANAVKAYADRLDDLLDIQRGIIEQQAADIRLLKARIADQNDAIISGKAIIPDAHPFQE*
Ga0074471_1078341522F053888N/AMNQSSVSFIKAGDRVLTLSRPVLPHAARRLVSVIPQLTALNTAGKSQADAAEAMGVSVGCIRNWITLAAIPWSNLNKRGPYKRNA*
Ga0074471_1078341524F014261N/AMKTLIALIIFGWLAVVTFCGPELARAINGAEPVKAKVHRNR*
Ga0074471_1078341526F003583AGGMAKAKQSDGGNLLLAVTLVTGFAGLTALASAYIAGEVLQILQSRDALVIIVTDAGIKSDSVSVEQGLSAATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQKA*
Ga0074471_1078341527F001923GAGMNPEEIPHEVKDGLVAAVLGGLAMVARLLLSTEPVSIGWVIRRVFAAAITAALVGYAIQDHIQSPGLKMGAVGACGYCAPEALDYLLKYVKARGEKEVAKVTGKPNGKGKAKRRG*
Ga0074471_1078341539F092032AGCAGGMSEVNTGVVCLYGIGSGQQANLVIQSYSVASNFNNTGMVVDESGRTITARYDDRRSEITIEGVAKATSVPQLGAALTFTAKTASAYPAGVASVSFSGVITKVDDRGSSKGFVSVSVTAESFEDITY*
Ga0074471_1078341540F001055N/AMGTRSIRHIVESTLATYLSAQAGLAGVALLTGDSSATQTLPKAVVLCDSASPPSDLPEGLGNFSCSVRITLFSNADDTTLAQHRARCASLSGNMNDLASIQAAFVATGDATCYDVSPRAEDEGIDERSWATSFAYDVLTVLPPV*
Ga0074471_1078341542F001298AGGMSLFAEFLPDAKEMVADFPVAGSANSGAITFSCLISDPAIQTVLEAGGYMERTQYSVRLPAATASWTLPDGSTGASTAIITGGAVIPSLAQGKKIVAGGNNVRITSQTYKPGSAWVTLIVIDDNQ*
Ga0074471_107834156F065732N/AMEEYLSLDERIQWARRAGLSQERIDFLLACPKYTRAGRDGRDPIIKAENPNHHLQKLGDCWWFRLRRRKTDILQNLGGDLENARRRRDLMLKAYDQGLPIPTE*
Ga0074471_107834157F058813N/AMAAPTLVLICGYARAGKDTLASGILEWATRPSRKQNFADYLKDAGNDYLMSLNLEGNFHNEAFKVKNRDFLVAAGRLARSIDKDIFAKNLAYYCPIQMTPGEQAPETVVCSDWRYLNELQVSQTILHDLGWKVRTIYVSTSGVEAANSEELDSIMEIRERYAFDLEMTFAPNSRNAIMQEGRYIAKTWRL*
Ga0074471_107834158F001338N/AMEPTNERPPLTNISTNGTYKLKLIRPKGTDKVKVWEDGTASARLFFVDDKGFCLSKNFSTKYGKALAMLVGKFSGKFTSEIRMDATPAEYLQYLEPACGQTLLVGVECEANGEYNGKAQYKYKLSFPKGSQKPVVNDLPNPEDVPY*
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