NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074469_10397079

Scaffold Ga0074469_10397079


Overview

Basic Information
Taxon OID3300005832 Open in IMG/M
Scaffold IDGa0074469_10397079 Open in IMG/M
Source Dataset NameMicrobial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1022
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameIlwaco, Washington, USA
CoordinatesLat. (o)46.28551Long. (o)-124.05187Alt. (m)Depth (m).06
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080977Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0074469_103970791F080977N/AMFVSQIFEECAEILGTTDESKIFRKIQQAVATLMESGHWTHSVADVDVCTGWDKCSVTLPRGIDVPLAVNIDGSPTYFRNRLFQYHVNKGGMFNSVEWAWDDRGYVATLMDIIQPSQLVAVAELENDVGKTIRVLGKDQNNRTIRSQLANGTGVDGLLIPIHSQSDFAYGTIAPDDATVKTRSVAITPINLFKSISEHGLASGQGMSVTATTGTIPVALENGQTYYIGVIDAYTVQLFNDPLNAE
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