NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068851_10301178

Scaffold Ga0068851_10301178


Overview

Basic Information
Taxon OID3300005834 Open in IMG/M
Scaffold IDGa0068851_10301178 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)922
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008158Metagenome / Metatranscriptome338Y
F019739Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0068851_103011781F019739N/AMAEEWRVSLVIGGGGSTVKGSRYRDLLRARLGDDVAVSAGRMHLFLYAGSAKAADEAGQVARAVLEEHGQFAEVRLERWDPSGGEWREPDEPAEHEDRPEPG
Ga0068851_103011782F008158N/AMTIFLPVYPQYDIMFHRFLFQDHHSERAVYMLQQPVSPEPGRDGDPRQAEEDWLLWCESVENQLDPDEEEPDDAAPWDADLDAIIAECREITAEEAALAARAVRRGLPGGTPVADDRRGPGQPGSAQRRPGEFRSRAAGFAAGMLLDTMPGCGALAGFAA

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