NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068851_10520311

Scaffold Ga0068851_10520311


Overview

Basic Information
Taxon OID3300005834 Open in IMG/M
Scaffold IDGa0068851_10520311 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)716
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013213Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0068851_105203111F013213N/APRDSRHLHEPDLDGDAAARHGDAGAAADPLRAGADLGVYAPLIGAVRDELEHFVASHVRLHVVIAERDRFVLTSIGVRSPGGEEARELLQQFMHEFRPEQVKRYLAREVIGRLPNAAVIDLSQFAGLSDLESGERPGDDGEYRELLAALRTTPALPVARPYDVSVIGRWSEADAASAISPAPTRGRRLDTPTTPLAGRRVEFDIDDGAGTRRAALAAVVPGRRYVVGKDESSDLRVDG
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Institute for Fundamental Biomedical Research
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