Scaffold Ga0078910_117940

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0078910_117940

Scaffold Ga0078910_117940

Overview

Basic Information
Taxon OID	3300005835 Open in IMG/M
Scaffold ID	Ga0078910_117940 Open in IMG/M
Source Dataset Name	Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Norwegian Sequencing Centre (NSC)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1041
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities

Source Dataset Sampling Location
Location Name	Alnarp, Sweden
Coordinates	Lat. (^o)	59.8152338	Long. (^o)	17.6620518	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078910_1179402	F004383	AGGCGG	LHAGRYPEGAREYAREWVGMTDILERAFMARIRADEYREALAALQKEFDERPDVIDLKRRIDRCEEERRQCIAKAQEQGVTKQGSFRLKVRTRKQRTVIPERFFARFGAEAFVRCSTVAIGKAEALLGKGTFDDCCEVEVKDLGATVEYVRPGVSE*
Ga0078910_1179403	F003987	GGGGG	VIPALPCGTFSDSDTPAGAFYVAAFEEGDTPHHVGEYRIETVIRALEALQACGYDDVEIGSIFAPDPEHVHLLLTGLDGEARFGDWQLGCIAVAPVGVE*

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