NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074470_10509677

Scaffold Ga0074470_10509677


Overview

Basic Information
Taxon OID3300005836 Open in IMG/M
Scaffold IDGa0074470_10509677 Open in IMG/M
Source Dataset NameMicrobial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33953
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (51.52%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameAstoria, Oregon, USA
CoordinatesLat. (o)46.15968Long. (o)-123.80651Alt. (m)Depth (m).06
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068264Metagenome / Metatranscriptome125Y
F085312Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0074470_1050967711F068264AGGMKLNEITAEDVLAGKLWIIEPGQDGETNPTVKESVGFAGEDTGLISAVVRIADGSEHLGLVVKSFPQGGDDVDIYIKTNFGWLNIHANGFMRALGKYSHEIFPFDYFLSSPWKGGKQPEPDKVSSHPKIFRDTAVRIKQAPGAAKKK*
Ga0074470_1050967731F085312AGGAGGVSSPASSVSGELPTKAGIVKATIVPGAGKNQIQTVSFSGTFKAEPPGILAKLEQALAGVTIDEAPGKIEDFFGQNPGALAGVEPEEFLTVLTLAFMKVRRTTSSAPDPAAWKKGQA*
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