Scaffold Ga0074470

Basic Information
Taxon OID	3300005836 Open in IMG/M
Scaffold ID	Ga0074470_11635436 Open in IMG/M
Source Dataset Name	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005836 Open in IMG/M

Scaffold ID

Ga0074470_11635436 Open in IMG/M

Source Dataset Name

Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon Health and Science University (OHSU)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10065
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

10065

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Astoria, Oregon, USA
Coordinates	Lat. (^o)	46.15968	Long. (^o)	-123.80651	Alt. (m)	Depth (m)	.06
Location on Map

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Source Dataset Sampling Location

Location Name

Astoria, Oregon, USA

Coordinates

Lat. (^o)

46.15968

Long. (^o)

-123.80651

Alt. (m)

Depth (m)

.06

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F023552	Metagenome / Metatranscriptome	209	Y
F047082	Metagenome	150	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0074470_116354366	F047082	GGAG	MIQNFRRKRWSRMSFCAVLLLFLASSASAQSPDKIPREVIDHAAANGTALVLVGLNVPWQMESTLNADDLQTQRNAIASIQSDLLTELGGTNYKILRRYQDVPGIALEVGADALAELARLPIVTNVLLDRPAGSAIPPAQGSAPQSGTIAVLANTEKVPSNLFTRAARDGTVLVLAGLRTPWQREDQLSDELLALQQNAIQSAQSYILAELTGTQYKVTRLYRKIPGIALRVGVDALIILEKSPAITNVVLDRPAQVRR*
Ga0074470_116354367	F023552	AGGAG	MASNYDGRDAASDIVARGPDTADTGSGASLRSLKQELKTLRSRSKSRQPKKPTKLERARKLHDAVTTLVQELKNGEFAGLSSRPGPVTIIGPEIDDPKTDGRIGHVREPLGIYIQRLSVKDNFFQRPPFDHMTDPIYRRLIRDFIEGAAMPESKIAAIGWAGGVRSLSDANIRYSIIDGLQRLYCFLIAILLVWRREQLVQDGIVPEDGWNFVAESVKKLGDPRIATEALLQRVIRYEIFYGIGLAGLLHYMVTFNSSQRRMSLRVQLEIMKRPLIEHLKVEGIPIWEDLGKMPGEQRPKDKFLASDIVMATQAFITHNAHVSTAVETERFLDENQPYLDNIGDITDIVKTLKRISAEIHPKLAQAYESDAAFRYIMMHGDPFLLGFVAACGYVRNRGGIEILDKALDRLVSEFDRRGDDPLDIESYQQALAIIDASRGKDARRLVDDTVRRFFLGVTMELDWLDTACQITGAAER*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074470_11635436

Overview

Ecosystem & Geography

Associated Families

Sequences