Basic Information | |
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Taxon OID | 3300005837 Open in IMG/M |
Scaffold ID | Ga0078893_10014830 Open in IMG/M |
Source Dataset Name | Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Australian Centre for Ecogenomics |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14792 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (57.14%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia |
Source Dataset Sampling Location | ||||||||
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Location Name | Port Hacking, Australia | |||||||
Coordinates | Lat. (o) | -34.1192 | Long. (o) | 151.2267 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017147 | Metagenome / Metatranscriptome | 242 | N |
F020191 | Metagenome / Metatranscriptome | 225 | N |
Protein ID | Family | RBS | Sequence |
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Ga0078893_1001483013 | F020191 | N/A | MSNNVIKNVYQNSLYQKILHEINGVIFPLSDQWKRIGISVSGGLDSALMSVLLCSIITQNLWLTKVHIITNIRCWKTRPWQKQNSLDVYNWLVKSFPNIEFKRHENFIAPDLEWGSKGPNIVDEYGKLKSGNQIELRSHAEYVAHTEKLDAWYCGVTQNPDKEFDERLADRDVFIDSLGDKTLDRLIKPHMGGYACHPFTYVKKDWIVAQYKKLGIMDLFDLTRSCEGDANIYPEVFGDLDYKTYVPGSPVPTCGKCFWCKEREWGVANSDKE* |
Ga0078893_1001483015 | F017147 | GAG | MHKWKNFYKFKEGLAVTNLLYEPLVSKDKKIFCMNWNKNQYHDNEFMTEELYNFWFNQECKYLLHLSNKKYIPEILLMDTKKRVIEFRWYDKNLNVMIENNTINKVKNWQKKIKEIKDDLEKDNIFKINMYPHTFFFDDEGNAHIMDLYGCTDKHSRYLDTKFLKPLIRGTRFDKFIRNERLDTHKLYQETIKTNYAEWPGDFLNA* |
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