Scaffold Ga0078893_10187207

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0078893_10187207

Scaffold Ga0078893_10187207

Overview

Basic Information
Taxon OID	3300005837 Open in IMG/M
Scaffold ID	Ga0078893_10187207 Open in IMG/M
Source Dataset Name	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5092
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location Name	Port Hacking, Australia
Coordinates	Lat. (^o)	-34.1192	Long. (^o)	151.2267	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021205	Metagenome	220	Y
F022641	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_101872072	F021205	GGAG	MNKTQKQANINKIEAQVERWDLFARLVPTVFLVINLILVTTGVLDFEQAFWVGLGLFAVTAVTWWFWTIYTIKHLIKTLNRASKNLAEVRGEFKSVSRDLEKFKNDKR*
Ga0078893_101872073	F022641	GAGG	VNLSQSVATWRNLKMTKDNKFILIKAMTNVISGLSMVTIITLGIMYMSFDNAFVFQDVKIEIVNNPVEKHDDIEFMMIGSKKFECASTEVYGTAYHSDGHMHRLDKFTKQYTRNTSPGIARPNQWSMAVPDDMLHGGEYRVSMTGVFTCNHMIFQTEKTQTYDNILLVVNPR*

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