NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078893_11395758

Scaffold Ga0078893_11395758


Overview

Basic Information
Taxon OID3300005837 Open in IMG/M
Scaffold IDGa0078893_11395758 Open in IMG/M
Source Dataset NameExploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6246
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005132Metagenome / Metatranscriptome411Y
F016593Metagenome / Metatranscriptome246Y
F024348Metagenome / Metatranscriptome206Y
F088540Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0078893_1139575811F005132N/AMVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQFTSIQDLLGTCLYDDLEAKVLAESLSVAEQGLFKLVKYTLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISTTVDSKLSYINKRITNYILDNAAIKAIATADGCDNDLFDEEDTYQGDVFYPQDGIIYKSCEDGGVSYNP*
Ga0078893_1139575814F016593N/AMKRLKTGVVNTLSFVKLSSFTVNSFDVTLDKVVGTGSLTITNLTDLNNLDSCKDFIQINIDLLSNDIEGGEYELTITNSGDSYKYLTEVQDYTVTQTGSGIYGSTVRFTDL*
Ga0078893_1139575816F088540N/AMKGNIYITVPTADITNELPAAITRYDWTENTYNEEGEVESTTNHHPTWEEFGSRNS
Ga0078893_113957583F024348N/AMLFEEYYEDLTDAEANLILDIYRVIDLLVYNHDPVTLVRLGFELGINTQELSDYLPIIITILNKVEEQYAEVRQVAD*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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