NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0008649_10022229

Scaffold Ga0008649_10022229


Overview

Basic Information
Taxon OID3300005838 Open in IMG/M
Scaffold IDGa0008649_10022229 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3123
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045995Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0008649_100222293F045995GAGMSMMTKNVVTFFGSNEDMEKVTERLYLPGVTNEDDHCFDFNKIIPSPNELSYIHSSRFNSGEKMIHGRKYEHWYYENHAGEMIKKDPDDDPELSTLKGMSSKMEKQFMRKYGALNKHNWICKNWGSTSNSIGPHLKRSEEKLVYNFCTNYGSARLIILEIESMIHRGEFPKVKMMWEHDNFDAHICLMDNDDYVPDPTPVFTVGFAETEKSTSEYYKEAYS*
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