NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068863_100073211

Scaffold Ga0068863_100073211


Overview

Basic Information
Taxon OID3300005841 Open in IMG/M
Scaffold IDGa0068863_100073211 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3241
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092546Metagenome107Y
F103958Metagenome / Metatranscriptome101Y
F105952Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0068863_1000732111F092546GGAGVLSEVPYRCLGRYREPAIVLLLTVLAFAVRVYRVDFNSLSEDESAKWTAIQEYRHGHF
Ga0068863_1000732112F105952GGAGGVSRRRGAPNARRADPIGTSAGPISRERLDSRVTVLAIEQALAELGIHARLSDIVAKARSIENEFIELRTRRTPEQMC*
Ga0068863_1000732119F103958GGAMTTPALNSRVQSLVIEYGVFWQFWPQFEQTHGERRQVGFEVELIGSHTSDLNHVDPACPR
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