NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068858_100543518

Scaffold Ga0068858_100543518


Overview

Basic Information
Taxon OID3300005842 Open in IMG/M
Scaffold IDGa0068858_100543518 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1124
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000661Metagenome / Metatranscriptome950Y
F096515Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0068858_1005435181F096515N/ALGSNGVDRVRWLRKIPTRLRGMNFCTSSARFAPSFVTQPNGPKCPKIIRNAPKHEFRVQWDGSGAFIAKNSDATSWHELLHQFGPFCTEFRKQPNGPKCTKIVRNAPKHEFRVQWGGSRALVAKNSDATSWHELLHQLGLFCTEFRNSNKRSPMPQNYTKCTKT*
Ga0068858_1005435182F000661GGALVELRNSVQNRPNWCKSSCHEVASEFFATNTRDPPHWTLNSCFGAFRTILVHFGPFGCLMKLGAKRAELVQKFVPRSGVGIFRNERTRSTPLEPKLMFWCISYNFGAFGTVWLTYETRCKTGRTGTKVRGTKSHQNFSKRTHPIHPIGP*
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