NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068862_100969525

Scaffold Ga0068862_100969525


Overview

Basic Information
Taxon OID3300005844 Open in IMG/M
Scaffold IDGa0068862_100969525 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)839
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009482Metagenome / Metatranscriptome317Y
F066093Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0068862_1009695251F009482GGAMLKVEMAPLVIPLLLIATPTVADVTSELARCELEAERLFPAPHNKGAQNWPERASNLQKRAENIETCMRAAGYGVTAECSAPLKTYESCMKIADKLMRGPTGSQYRDADWNRICLDNEWDVRTQERLSAML
Ga0068862_1009695252F066093N/APVMGCACTGRVRSLASATHVVLLTLISTLDAAETSICTVAANPSGFDHRQLTLEGIGAGLTKGTSRSGRKDMTFLLRSPVGCGGVIVYAQEPATLRNGDHLQVEGIFEMQHRRDGSTFHNEMQATKITTLPR*

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