Scaffold Ga0080008_139130

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0080008_139130

Scaffold Ga0080008_139130

Overview

Basic Information
Taxon OID	3300005854 Open in IMG/M
Scaffold ID	Ga0080008_139130 Open in IMG/M
Source Dataset Name	Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1655
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Conch Spring, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075483	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080008_1391302	F075483	AGAAG	MIELLLVQAVTTLALAFFVIKLRRELWPMIATAGQPYASFWIRSVDVLVLAAPQFEAAKTVIRVRWLFTEELSLRYRFRVYDVAMHPSRRHHYVRWKAWLNGNDRYRCEVEKPRGLSRIYTKAIDVFCREVKKDEKKEVVILPSRWRKRRYRRWTKPEPSRGAPP*

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