NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080005_111312

Scaffold Ga0080005_111312


Overview

Basic Information
Taxon OID3300005856 Open in IMG/M
Scaffold IDGa0080005_111312 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58997
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (54.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076261Metagenome118Y
F099548Metagenome103Y
F101501Metagenome102Y
F101502Metagenome102N
F105516Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0080005_11131218F101502AGGMSQVPKTPIIAFTIVLGIGLAVVVIGASEPLRPGIGAVLVLIASIACAPIYAWLRHPGLLIAIELGVGVLLTIIIVNWLHGVSPLTSLEWYYQALRTLITPLARLTP*
Ga0080005_11131219F105516N/AMPRALVTILAVGILNPNLKTFKIIENERVSVTGDGTIKCTGESCNANGTYIILEAEHPNARELYDALKKVRILKIEIAISGLPRQLLTRLEFLVGKPISDNATVRYTWHKMPSFEELALALNDLNL*
Ga0080005_11131265F076261N/AMIGSVAFQVGNATSSQVVSSAVGYFAPVIDAIMAFLGIAFWVSLLFLVYYGIEAFAHPTPFGRSARLASMYDHAKSVIWGIIAIYLVLAVIAFAVNQASAAAGAKTTVSVGQLFYYVFVEPVVRGFSIIFGTTK*
Ga0080005_11131281F101501N/AMMEVAIVEWIIRENEEAIRSIVKRAFNGEYRGYTNDAVPFIRIKVKDGVIEIPITHQAFKPILEKAYKALDDYGKRRLLAYEVGGTFKVHPYYIQLLILDAIQLSQLLGIRDTSTLVKTLLEHPLSQERAGMIGRLGVEWLVSRMIDVGLLNMPSP*
Ga0080005_11131285F099548AGGGGGMQSNMPWSVRRIVARLIVIAIKGAPGDCIHITPSLLGDMLGDGAVREALRLLRAMSLHGILDRGYGAYTLCSTDNPQLWAIAKGLPIDEAVAWLLWLIEDASDGKPISTGPNYEL*
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