Scaffold Ga0080005_130520

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0080005_130520

Scaffold Ga0080005_130520

Overview

Basic Information
Taxon OID	3300005856 Open in IMG/M
Scaffold ID	Ga0080005_130520 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8056
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Joseph's Coat, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101502	Metagenome	102	N
F105516	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080005_1305202	F105516	N/A	MPLMPRAIVRVLALGRVSLNLKTFRVIENERLSITDDGAVKCLGGGCSANGTFITLEADRPDPRELYEALKKVHVLKIEVEVIGLPNWLLSRLEFLVGEPISTDKVKYTWHSMPSFGELALVLNDLNLPAP*
Ga0080005_1305203	F101502	N/A	MSQVPKTPIIAFTVVLALGLGIVVIGASEPMKPGIGAVVVLLASLASAPIYAWLRHPGLIIVIELGVGVFLVIIIVNWLHGISPLTSLKWYYNALRVLITPLARLKP*

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