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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005856 Open in IMG/M |
| Scaffold ID | Ga0080005_133721 Open in IMG/M |
| Source Dataset Name | Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5543 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Joseph's Coat, Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F056742 | Metagenome / Metatranscriptome | 137 | Y |
| F070317 | Metagenome / Metatranscriptome | 123 | Y |
| F077499 | Metagenome / Metatranscriptome | 117 | Y |
| F077502 | Metagenome / Metatranscriptome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0080005_13372110 | F077499 | AGG | MADLFVFPHESLKPVNYPNITNVEIIFILTITVPMGEHPNADSPMDEKMRFLSTYMPLEFQKLYYMKTIDRALDILKYSLYSREENVLFEIANKINSMYDIKQLTNKIKDVECTKDLKQINVILTEAKRYIYPDISLSKHASAQAKQLGIKKYEYYSRIFQCYIEQDRDLDMLTLFRVSNIVYNYIRLNNLSNIMKKMQFKNDKMVQLAEKIKQRVKITLDAMADRRPIEPDESILNSITIKIKEIDLG* |
| Ga0080005_13372111 | F056742 | N/A | LKLADCRYKCKQAYFRRSLFVRMFITEVERVYNVKVNSCEDFCKFYVLFLSVSEILYGKHYNYAIFKAITRGRPNLYKCLKCDSVLTAEESITHALQHMKQLGYKPLNYEESI* |
| Ga0080005_1337217 | F070317 | GGTGG | MQTTVNNMSTMEELKELNLEKIVRDAQEGEVCVINKILKGKLTDLMPLIRDPATLSQKAMEFIQSRGDDVFYLFQCTTRQGRNVKLLVRQSFDPRSTFYSLMKKYKTIKVGDEINVFYNPEKRRYDFLL* |
| Ga0080005_1337218 | F077502 | GAG | MTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFQSVREIADTFREVIYRSIEQSVGTLTEEVKEQVDAYFFKKLNDIYDKYYS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |