NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080005_135424

Scaffold Ga0080005_135424


Overview

Basic Information
Taxon OID3300005856 Open in IMG/M
Scaffold IDGa0080005_135424 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4058
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Deltalipothrixvirus → Acidianus filamentous virus 2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038746Metagenome165Y
F052280Metagenome143Y
F070689Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0080005_1354243F052280GAGMAETQTLMIELKKYGFRFYLSSNPEKSWFVNVNELKPDYFVFVEEENREMKNVHDFKYEDFGVKNIIELLFAMVLRPSEYFEQLTGEKVEIEEIHIFLY*
Ga0080005_1354245F038746AGGTGGVIRKGNKYIITIRSPKDLEDIKNNIAKYKEELKDGEQLEIQIAKSGKYVLKMIVSKSDVRHEISTDDKKHVLEIENENDAVALRKLIQILLALAFNKPN*
Ga0080005_1354249F070689GGAMTLEVNYNVYRRIVQFAKTSDKPIPILRFKPPRKVGVGDIVKIRSVQNTYKTKTLIAKVVEIKEYDGDKDGIPYDDLKPIYESYLKQIPKLPRVVIIYVNPINF*
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Institute for Fundamental Biomedical Research
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