NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080005_138222

Scaffold Ga0080005_138222


Overview

Basic Information
Taxon OID3300005856 Open in IMG/M
Scaffold IDGa0080005_138222 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5968
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F063848Metagenome / Metatranscriptome129N
F075084Metagenome / Metatranscriptome119N
F076263Metagenome / Metatranscriptome118Y
F080245Metagenome115N
F081547Metagenome / Metatranscriptome114Y
F085905Metagenome111N
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0080005_13822210F061983AGAAGVFKVKVIPIKVIDEEGVLSEQEFQEVVKTRIYKGMKVLEVKDLGVDEFWRFAHYYELTTVVESGGLFDCYYGDVIDVGKLKDVGGIVVKENDSEPVRSMKALVAKWYNKKLVEEEKAYDVCNKLIT*
Ga0080005_13822212F085905N/AMEESVSFPSSRLSQFDYVAMNAYWLNMRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKNFEYGLVYIYSNSRIDTLFIVALTHYFNVKRESEYYRSIPMDAIQNVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVMARHLLPYSILEVVRRHMRK*
Ga0080005_13822213F063848N/AVAKKRRSVHDPTLSVIHYQEQLEKMAKAYENSANRRNQRATTGFTNLKFVQQAVKDYLNEVSEAMKLPVIAQLAVEFLGVAMAYLKGSNEGYNSYALAGRVAQIATLRATHVIHTTTLTCAQVGEIINGMLKKISGATADPFTFTETDGVCKATVANPLPKMSVASVSTGYTVSLSDVLKAKTPEEVLMGK*
Ga0080005_1382223F075084AGGAGGMIYARRLSASWYGYDTGVLLERALRRILRWSINYCNIVAKLGLQSEYCRRYTYYDEVPCEPVSEYDVEVAYSRIIRMIANYNNETVSKLLTKMTQECSTYEVRG*
Ga0080005_1382225F080245N/AVIFVWSARVTIPGFREEIFVSPALINMYAEITEGVYEVGMFMVPHRGHALLFLPTMVIKVNEELMKDLEQTSIEDLNTPLNTIDHVFT*
Ga0080005_1382226F087442GAGGMMREGLVKAGDLVIDCKPCYIAGTGFTKDDVYVVSEGTVVFKWYDKIAVITVSEEGTKLNLLDIIDVRFLVERNENCMVTKL*
Ga0080005_1382227F081547N/AMPYLRGVFINFGEETYYLSCGIVKGGNLDPETYTISDPELMMVRLGRDLYIVTSELKLLIPVEPIRVLLNSETSKVYNEAIMQGNEVKPT*
Ga0080005_1382228F076263AGCAGMLSAEDLSAILDDLEDLCARLPEGVTFHPTLEIHRHFANEEATYIKFDCRNHRYILTIIRQGIAKTTRVSSREELFRRIFPEYMPGYTGSYTEEFWGEE*
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