Scaffold Ga0080007_1060994

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0080007_1060994

Scaffold Ga0080007_1060994

Overview

Basic Information
Taxon OID	3300005857 Open in IMG/M
Scaffold ID	Ga0080007_1060994 Open in IMG/M
Source Dataset Name	Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3496
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Thermoproteus → unclassified Thermoproteus → Thermoproteus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat Streamer → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Octopus Spring, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F075483	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080007_10609944	F075483	AGAAG	MIELLAVQAITNLALAFFVIKLRRELYPMVAAAGQPYASFWIRSVDVLVVEAPQFEAAKTVIRVRWLFSEELHLTYSFRVYDVAMHPYRRHHYVRWRAWMQGDDRYRCEVEKPRGLARIYTKAIDVFCKEKEPPKEVVILPSRWRKRRYKRWTKPVRSGSAPP*
Ga0080007_10609945	F013155	AGG	MELYQVIIVAIALANLAVTIWLLRLLIPIWQTLRKVVFALDNFDFDEISKRFLSNEKPLAEAVDIKVSEKKEEGYREISIIRTYKKPLDPREIQANFVRQMAEKLQ*

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