NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080007_1086114

Scaffold Ga0080007_1086114


Overview

Basic Information
Taxon OID3300005857 Open in IMG/M
Scaffold IDGa0080007_1086114 Open in IMG/M
Source Dataset NameHot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11870
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat Streamer → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameOctopus Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043237Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0080007_108611410F043237AGGAGGMDLERTSRYIAQLSRHGYKYAILGELSNYNRELVKKIDLEGFVFYLCRLPSKREVIAYCLKKTDKPFKVYCLASKPLEIPHMPLKLHYDEKTRRLRLLAQKSFINDCLNAIEKASEVKYPSPKLYLAHINRVLSQLYAILAYTYNDRERVRAIRKKVKHWVVEALKRHGLKPKDAMTDYHRYVLKFSDVLRKKKQKAPKR*
Ga0080007_108611414F043237AGGGGGMDLEKTARYIAQLSRHGYKYAILGELSNYNRELVKRIDLEGFVFYLCRLPSKREVVAYCLKKTDKPFKVYCLASKPLEIPHMPLKLHYDEKTKRLRLLAQKSFINDCLNAIEKASEVKYPSPKLYLAHINRVLNQLYAILAHTYNDKERLRAIKRKVKHWVVEALKNQYGLKPKDAMIDYSRYVLKFSDVLKKKRKAPKA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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