NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080003_1000394

Scaffold Ga0080003_1000394


Overview

Basic Information
Taxon OID3300005859 Open in IMG/M
Scaffold IDGa0080003_1000394 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29488
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (54.00%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Associated Families14

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056742Metagenome / Metatranscriptome137Y
F061983Metagenome / Metatranscriptome131Y
F063848Metagenome / Metatranscriptome129N
F070317Metagenome / Metatranscriptome123Y
F076263Metagenome / Metatranscriptome118Y
F076264Metagenome / Metatranscriptome118Y
F077499Metagenome / Metatranscriptome117Y
F077502Metagenome / Metatranscriptome117N
F080245Metagenome115N
F080247Metagenome / Metatranscriptome115Y
F081547Metagenome / Metatranscriptome114Y
F085905Metagenome111N
F087442Metagenome / Metatranscriptome110N
F087445Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0080003_100039412F080245N/AVIFVWSAHVIMPGFRDEIFVSPALINSLGELTEGVYEVGMFAVPHAGHALLFLPTMVIKLDDRLMKQLEDTTIEDLNYPLNTIEHVFT*
Ga0080003_100039413F087442GAGGMMREGLAKAGNLVVDCRPCYITGTGFTKDDVYVVSEGTIVFKWYDKIAVITVGEEGVKVTLLDIIDVRFLVERNENCLVTKL*
Ga0080003_100039414F081547GAGGMSYLRGVFVSFNGETYYLSCGIINGGELDPETYTIYNPTLMMVRLGRDLYIVSNDIKQLIPIEPIRQLLTSETSKVYNETMAQGNEVRPA*
Ga0080003_100039415F076263N/AMISLEDLSAILDDLEDLCARLPEGVYFHPTLELRRGYANEEATYVKFDCRDHKYILTIVREGVARTTRYSSREELFRRLFPDYVGEGII*
Ga0080003_100039416F080247N/AMIVWGKLIECMIDTDVNYLNGELFGNPLRIKGKFLVFGNLYTFERTISETQTEQICVPIDATFMAYYEGMVAIMSFYLKEREMYANVSLTEPGTIKSFMNMSSFYRKYGISIPSLLDKIMYRKVPT*
Ga0080003_100039418F061983AGGAGGLKKEEIKVTVIPIKLFDEEGVLSEKEFEEVKKTMTYKGMKVLEIKDLGTDEVRKWMHFYEIVAVSEGGGLFDCYYGDDILVEKLEYVGAIVVGDKDTQPVKTMKTLVAKWYNKVLVQEEKAYDICNKFVT*
Ga0080003_100039420F085905N/AMEEKALFPSSRLSQFDYVAMNAYWLNARLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKNFEYGLIYVYSNSRIDTLFVVALTHYFNVKREKEYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKIDERIVLMMWNQLYIFVMGFLYGLYGRDAEAVFSGVVARHLLPYSVLEVIRRHMKK*
Ga0080003_100039421F063848N/AVAKKRRSVHDPTLSVIHYQEQLEKMAKAYEKSATRRNQRAVNGFAILKQVQETVRDYLNQASEAMKKPIIAQLSVEFLGIAMAYLKASNEGFSSYALTGRVAQIATLKATGIVSSTELTCAQVGEIVNGMLKKVSGMTADPLTFTENDGICEATPANPMPKLSIASPSTGYTVSLNDILKAKTPEEVLMGK*
Ga0080003_100039424F087445GAGGMSEYELKRVFKMIPIDKRLALALDAIQEYQSIQTKFNNLLNGLAMNSPKVREVVENARKNRKPIDRFVDMIMDMMETMMKSKAMSLTDEDRAKLREKLKQVMESEE*
Ga0080003_100039426F076264AGGTGGMSSISGAIQSMVNGLQNLFTAIVQVFGCAVNAIGNTLSSLASPIGYLIGVLAVFGSLIAIIWYAFRGRGGIGGLVGSIKNFFTGFL*
Ga0080003_100039427F076264AGGMSSISNAIQNMVNGLQNLFVAIINVFGNAVDAIGNTLSSLASPIGYLIGVLAVFSSLIGIIWYVFRGRGGIGGLVGSIRDFFTGFL*
Ga0080003_100039437F070317GGAMSSVEEIKELNLEKITKDAQEGEVCIVNKILKGKLTEIMPLIRDPASLSQKAMEFIQRRGNDIFYLFQCTTREGREVKLLVRQSFDPKSTFYGLMKKYKIIKIGDEINIFYNPEKRRYDFVL*
Ga0080003_100039438F077502GAGMPTHGTDTAHIILWIEQNLPEEGKLSELIESIFSLIQEIILNNLSQGKQPITFTSVREIADAFKEMIYRSVEQSIGTLTDEVKNQIDTYFFKKLSDIYDKYYS*
Ga0080003_100039440F077499AGGTGGMTDLFIFPNESLKAVGYPRITNAEIIYILTITVPIRDHPDTDAPMEEKMKFLSAYLPLEFQKIQYMKAIDKALNILRYSLYSREDNVLLELANKINDTYEVKKLIDKIRDTECAEDISNIKVTLTEARRYIYPDLSLSKYASAQAKQLNIRKYEYYARVFQCYVNQDKNLDMLTLFRVSNTVYNFIRLNNLTNIIKKMQFKNDKIAQLAEKIRQRVNITLEAMGEKKITQPDENLLNSITIKIKEIDLG*
Ga0080003_100039441F056742AGGMKLADCRYKCKQAYFRKSIFVKMFVKEVEKVYGVRLRTCEDFCKFYVLFLSVAEMLYGKHYNHAIFKAIVRGKPNLYMCIKCEQPFTAEESITHTLQHMKQLGYKPLAYKENI*
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