NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080003_1000413

Scaffold Ga0080003_1000413


Overview

Basic Information
Taxon OID3300005859 Open in IMG/M
Scaffold IDGa0080003_1000413 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28730
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (51.61%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026606Metagenome / Metatranscriptome197Y
F041867Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0080003_100041311F026606GGTGGMMAGKIEKEMEEFLGVGAEELREEIINKAVWLRKDHSKMVVLRVFPDGTYDISIGQEGSYDGYDNGERLWVSFSLIEPWDLPDFESVIQNGDEYTDPDTGDEYEDDGELLEAVRTSVASGFYHKFEEEWEGFLFAFQEWRKFLMDSRHFRIRES*
Ga0080003_10004136F041867GAGMNAFDREFWNGALKASIMIERDLKKLLGEADEGEKEGIKVAIARIREMKESIETLHGNSVLKALREIELEEQ*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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