Scaffold Ga0080003

Basic Information
Taxon OID	3300005859 Open in IMG/M
Scaffold ID	Ga0080003_1000886 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005859 Open in IMG/M

Scaffold ID

Ga0080003_1000886 Open in IMG/M

Source Dataset Name

Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17693
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (70.00%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

17693

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (70.00%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (54.55%)

Associated Families

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Joseph's Coat, Yellowstone National Park, Washington, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Joseph's Coat, Yellowstone National Park, Washington, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080003_100088616	F075084	GAG	MRPCRKDVCLLYSLGADYAKLTDFTNQNPQGRLFRAGARAMSYAIGLMRSWYGYDTGVLLERALRRILRRSIAYCRVMERLGLESEYCRRYTYYNGVPCDLVSVFTVDVAYGDIMHMIANYNGETVSKIFTKMTEMCSTYEVIQ*
Ga0080003_100088617	F080245	N/A	MIFVWSARITIPGFRDEIFVSPALINKYAELTEDVYEVGMFLVPHKGHALLFLPTMVIKVDEELMKKLEETSIEDLNYPLNTIANVFT*
Ga0080003_100088618	F087442	GAGG	MMREGLVKVGNLVVDCKPCYVAGTGFNKEDVYVVSEGTVVFKWYDKIAVITVGKDGTKVNLFDIIDVRFLVERNENCMATRL*
Ga0080003_100088619	F081547	GAG	MPYLRGVFVNIDEETYYLSCGIVKGGNLDVETYTINNPEMMMVRMGRDIYVVTSELKLIIPVEPIRVLLSSETSKVYNEALSQGNEVRPA*
Ga0080003_100088620	F076263	GGAG	MLSAEDLSAILDDLEDMCARIPEGVTFHPTLEIRRRYANEEATYIKFDCRNHKYILTIVRMGIAKTTRVSTREDLYRRIFPEYAPGYNGSYTEEYWGEE*
Ga0080003_100088621	F080247	N/A	MIVWGKLIECLIDADINYLNGEPFNTQLRMRGKFLTFGNINIFEKTMPAGLETEQTIQICSPIDATFITYYQGMVAIMSFYFRDSNLYANISLTDPDTIKEFLILSTYYRKYGVNIPNVLDKIMYRKVPT*
Ga0080003_100088622	F061983	AGGAGG	LKKYTFKIKVVPIKLFEEEGVLSEQEFEQVKRTRIYKGMKVLEVKDLGYDSFWRNIHYYELIVISEGEGLFDCYYDDVIIVEKLKEVEGIIIKEKDPEPVKVMKKLVASWYQKKLVDEEKAYDVCKKFIM*
Ga0080003_100088624	F085905	N/A	MEEKLSFPSSRLSQFDHVAMNAYWLNVRLKYFTDPILYAVATGIWVINLMDDVDIAETGTQKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMEALQEVMKSLVHFMNDKLKILDKLKEKLDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRHNKK*
Ga0080003_100088625	F063848	N/A	VAKKKRSVHDPTLSTIHYQEQLEKMSKAYEKSSNRRNQRAVNGFTILKQVQQDVRNYLNEVSEALKMPVIAQLAVEFLGVAMSYVKGSNEGFNAYALTGKVAQTATLKATDIIHATTLTCAQVGEIINGMLKKISGATADPLTFTEDDGICEATVANPLPKLSVASASTGYTVAASDIFKAKSPEEVLLGQ*
Ga0080003_100088628	F087445	N/A	MSTSSSKPGDELVQRLLNMSEYDLKRIFKMIPIDKRLALALDTIQEYQNIQTKFNRLLDGLAMNAPKVREVMDRARRDKKPIDRLADMFMDMMETMLKSKAMSLTDEDKAKLKEKLMEVMESEE*
Ga0080003_100088630	F076264	GAG	MSAISTAIQNMVTGLQNLFIAMIDLFSNAVNAIGNTLSSLAQPIGYLIGVLAVFGSLLAIIYGVFRGRNGVGGLIGGLRGFFSGFI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080003_1000886

Overview

Ecosystem & Geography

Associated Families

Sequences