Scaffold Ga0080003

Basic Information
Taxon OID	3300005859 Open in IMG/M
Scaffold ID	Ga0080003_1001809 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005859 Open in IMG/M

Scaffold ID

Ga0080003_1001809 Open in IMG/M

Source Dataset Name

Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10744
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (40.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10744

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (40.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Joseph's Coat, Yellowstone National Park, Washington, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Joseph's Coat, Yellowstone National Park, Washington, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024140	Metagenome / Metatranscriptome	207	Y
F049100	Metagenome / Metatranscriptome	147	Y
F067920	Metagenome / Metatranscriptome	125	N
F084461	Metagenome / Metatranscriptome	112	N
F101504	Metagenome / Metatranscriptome	102	N
F102725	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080003_100180914	F067920	N/A	MPADLVFGISDQGLFGAISSVAEYILSFIKVLVEQASIYAVDFLKQMWSNPTQTITFLTLLGVVLI*
Ga0080003_100180915	F084461	GGGGG	MSLNLGDLLKSNKAILQSENGKIVLRITFDDLVQAIINGLPEQSKKVVSITHDDKQLVISFDASILSGTIGGIAR*
Ga0080003_100180918	F024140	N/A	MNWKPTSLSHIVSLITLMISLLGINAITFYYMQHPNTTQLLFISLVNITGLIGMSYYMVSFSANEKGVTIQSKPETTT*
Ga0080003_10018092	F049100	GAG	MEFRKLTQKEIEEIKNSVNHGGRKSLYDEYLKDMQIGDMVEVQNVNRGVISRAGQRLGYKFSVHFVNGKYYIERTA*
Ga0080003_10018096	F102725	GGA	VYEKKPEPEQNKEYRIINVEQQKGQFGEYIRVTLEDSEKKQYSSALWVKDTVSSTSKAGAFALALGTNPETWINKYIKVISWTPKNRVIIEIPKGIDTKTETKKVK*
Ga0080003_10018098	F101504	AGGA	MLNYLTTNFDKVLTINTVSQASLKQIGNELNNFDGILYIDDIGSINTEYMRITTMTTLTYLAYQHYLRRLDSTTNLEIKNFNGSLIINIQPAIFNEIANNTSFEANIMDKSYRIYNMRIPSNKPFQHPKIKELQHIKDKFDKMKVDIDKHKVEALADNFMTFNSPVRRYKIVYNFVKLTAILNEHKTAISSDYNFVSKMLLNNIIESELLQRKGITNTFKFNVFLFNTMLLAKEYGNVFHYDKLKKYLNVGTKTIYNYAKMNNIKIDNGYIIYDDERIIRVLKNVIH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080003_1001809

Overview

Ecosystem & Geography

Associated Families

Sequences