NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080003_1004014

Scaffold Ga0080003_1004014


Overview

Basic Information
Taxon OID3300005859 Open in IMG/M
Scaffold IDGa0080003_1004014 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5510
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067920Metagenome / Metatranscriptome125N
F084461Metagenome / Metatranscriptome112N
F102725Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0080003_10040141F102725GAGGMDINVYEKKPEPEQNKEYRIINVEQQKGQFGEYIRVTLEDSEKKQYSSALWVKDTVSSTSKAGAFALALGTNPETWLNKYIKVISWTPKNRVIIEIPKGTDTKKVK*
Ga0080003_100401410F084461GGGGGMSLNLGDLLKSNKATLQTEGGKIVLRISFDDLTQTIYNGLPEQSKKVVSITHDDKQLIISFDASILSGTIGGIAR*
Ga0080003_10040149F067920N/AMPADLLFGISDQGLFGAISSVAEYILSFIKVLVEQASIYAVDFLKQMWSNPTQTITFLTLLGVVLI*
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