NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080004_1100014

Scaffold Ga0080004_1100014


Overview

Basic Information
Taxon OID3300005860 Open in IMG/M
Scaffold IDGa0080004_1100014 Open in IMG/M
Source Dataset NameSulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4827
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameWashburn Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022018Metagenome / Metatranscriptome216Y
F082274Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0080004_11000144F082274AGCAGGMAGAVIKEKTKQEIFWTDFVRYHVDANSYLFSAAAEPWQVVIRLKGSLTDTSMNMFNDRLEDYLEAAYLLGEAAGFSEALRLLYELGLAKDYLERPKVLARLQKLAFELYWLTLRLDRTKIRRNESLAQKTAGLAYAFYRLFEKALKAAKAKR*
Ga0080004_11000146F022018GGCGGMAEKEDVVRAVMGSYGIYLGQVSETPWADAMDSIEYLEDFENPNDSELIGTLATWAGRSYKDFKGLWDGLSDKEKAEALADIEYEIAVLGFESLLKGIAADFDVMDNRDMREKIINAAKRYLNGEIDLYDMAEELENIFWPTEEDKKEYEQALRYFWDGIGLTNYIEEDKVKEMVRRYLVEELEALNEMQDVGEPGP*
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