NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080006_1123992

Scaffold Ga0080006_1123992


Overview

Basic Information
Taxon OID3300005861 Open in IMG/M
Scaffold IDGa0080006_1123992 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3611
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065947Metagenome127Y
F072527Metagenome / Metatranscriptome121N
F099550Metagenome / Metatranscriptome103Y
F101506Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0080006_112399210F072527AGTAGMSQPPNRLAELLQQAVLAFGADRVQVLQRIRQYIAQTDCTVLNVQLQQVTNINMLRMLQAAGVPQCMQTTFYLQINKALRGVTP*
Ga0080006_11239923F065947AGGMLKSNHIFNLDKIRSVLKRNKRIELPCVAYGTGNLSRKIGRGYFFYDFDTQSEEEVERFAKRVQYTFYVAYVLYRTKHGVMVMSTLTFSFEQLRKYFDQFQAEFPSDYMWEIPLFLRLSEKWDWQTGTVVSPMPAIIANPKEVDIYKLIREDMYPKKWYRTRD*
Ga0080006_11239924F099550N/AMYQLTNEIKKLLASKHKNMQIVWVPLPILDEIAQVAERLHLALNQTIIVLVIHALRGAQPQPNNGTGRFLCPICLQEFNIADDFLAHLRGDEDVKIKPHI*
Ga0080006_11239928F101506AGGMNEDAVARTRISAIEQRIQTVEEQISDIRATQLRQLERQNYVLMLLAISLVTTTINLIVLLVK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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