NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080006_1133605

Scaffold Ga0080006_1133605


Overview

Basic Information
Taxon OID3300005861 Open in IMG/M
Scaffold IDGa0080006_1133605 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14070
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F011233Metagenome / Metatranscriptome293N
F018963Metagenome / Metatranscriptome232N
F027904Metagenome / Metatranscriptome193N
F067921Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0080006_113360518F018963AGGAGGLSSVGLDSLGDRPLGTKLMFPYVRGEDGSVTDTLIMSFRTRRVVYSKLSVNKQGHGYRTYVLLPANYLMYEAYRTGRGRASIKISVIDVSPNPLSPFRVKDIWVMYEGVSPVTLLEDLPENIRVIIEQNSRKLPLYEYLETEVPR*
Ga0080006_11336055F067921GGGGGLSETFSRIEDRILRNGQYLLVSYLGSQHPEESSYTGFRVTKHNFITLYYNFATEVPNFLPMAPFGGQASSTNSPPYITNFKFSLQQAQNVTDMFDLSKNYDAYQVFYGISPSYLRTMLQIQQQFIAVLEQNINPSPSFVEMGIDGFQSPLFAPDPRTEFIVFLNLTYNMTLMNMATIPILPAFNFVINRMILEPLGREELKKAILAGFPVRSLGAVDSSIMISHKNYPGFVTLSYRDIYGG*
Ga0080006_11336056F027904GGTGGMEKYNPPEYDLFNLNNGSTLVGSTAVTLLYEGQTNAVVVVPPDLTLRVKQVIIQNTTGSVATVQLQAVTTQSGLPSPVNKTPPIPVPANSAVTLDEEEWSISVKTGYSLAAIDSGMTTGGSGSSNVFVKAYFVKGTGSPI*
Ga0080006_11336058F011233N/AMAVPWFLPFVKGWRYHVPGLQKQLLSGIPVSFTGTYIVLNGEFPGYFVSAAIGTTDPNFITRASVDGLIIIEVTAGDLRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEIVPRSQPALITGFAANIIEIYDVNLFKESTKEFFESITPSVVPPAVPTPPRFVAEEIVSAKLPVKVT*
Ga0080006_11336059F006070AGGMTLYPYLVVDLPITDTNTHTYRTDPFNPLALTQPGISLIRLGESVPPVRAFNVYVYNFANAALSVQVIANENAKNYQYGYLLDGLDYQSESSYPDFNVGSAVAVPAGSLSTPSVQAIQSDFYTGAAERYLSVALTYSTAPTTGFVRVHIDLFYEGF*
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