NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080006_1142421

Scaffold Ga0080006_1142421


Overview

Basic Information
Taxon OID3300005861 Open in IMG/M
Scaffold IDGa0080006_1142421 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4754
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y

Sequences

Protein IDFamilyRBSSequence
Ga0080006_11424215F011097GGAGGMIRDIPLYTSGGTDPFTDLAVGGSPITGSGGNGQLLRFHPNYARLLILITGLSGTSPSIQFTVGSFYGSNNYTLPPITSPQYVYIIGNENKTIITYLNTSSQVLQQVELPYNTFLNGVNISWSVSGTSPSITAYIHFEFEDEEEGE*
Ga0080006_11424216F008949AGGAGGMSSQTVTLGTQTITPKVQDLGNTYYIEFQVKITKYLNNSTNQTIDVKFICNKYKQVPSANPLSPPTTVQKTIQECVDEWYNINKSVYEVA*
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