Scaffold Ga0080006

Basic Information
Taxon OID	3300005861 Open in IMG/M
Scaffold ID	Ga0080006_1150194 Open in IMG/M
Source Dataset Name	Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2964
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2964

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F045200	Metagenome / Metatranscriptome	153	Y
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080006_11501941	F045200	N/A	PQFSIFYAKVHPDQYKPGAPASQWLDPPVLLVSYDQISRDVVNWADNVFTAAGYTPSSPGVINVPSNVYVTNYGYTNFAGAPSTVTLNFTGTPELKQLHMIYDMLDDTVLMYFSIMVPNWNPATKAQYVYKFPVSLLKSQQSVNQYAVSGLTPTTTSTPPPNDKPYFLGWLKFDSTVEQTIGNALGTIVVTTLQMQSAPQFAISFDWYKLGGSMGYKPSNGFLPAIYVGNPLYMVPIDYPHGDSLMAIAFADIHKNPAQPQTYYQPIITGYGFAMPAFAALPENLESCPSSYNGYSYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGAYAIPITLPPRPDWGGISSMRMKMLYVAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYYADNYIDGIAIYMDKSVISPKGKTLVTVPSLIFGQTSPGGSYYVIAGANGSNVVRHGVVAYTFGKKYARVYINLNAGNATFVNIYTRYRSRTAPDLQQMYGNSPNPNNTATYFPSVERNFGTLAYATDYSYSMPFATSYPRTSKFRVDGQVLWVLINGGNGPVWVELEGD*
Ga0080006_11501942	F011097	GGAGG	MIRDVPLYTSGGTDAFTGLSVGGSPITGNGSNYQVLRFHPNYARLLIYITGLSGTSPSIQFTINSPIGSNFYTLPPITSPQVVYIIGNENRTIITYLNTSGQVLQQVELPYNIFLNGVYVLWSVAGTSPSITAYIHFEFEDEEEDE*
Ga0080006_11501943	F008949	AGGAGG	MSSQTVQLGTQTMTPKVQDLDNSYYIEFQVNITKYLNNSTNQTIDVKFICNKYKQVVVPSANPLSPPTVQTVQKTIQECVDEWYNQHKSVYEVA*
Ga0080006_11501944	F076262	AGGTGG	MSLNPVIKGSYTLAAPQSVSVAASSSSSVSISFTPLGAGELYVYIALPSGVTATVSIGGQSVSLSNGGNQFLIPANVPIGSITINNSNTSAVSVVVWALFIEVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080006_1150194

Overview

Ecosystem & Geography

Associated Families

Sequences