Basic Information | |
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Taxon OID | 3300005861 Open in IMG/M |
Scaffold ID | Ga0080006_1169031 Open in IMG/M |
Source Dataset Name | Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5856 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (57.14%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Yellowstone National Park, Wyoming, USA | |||||||
Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F042426 | Metagenome / Metatranscriptome | 158 | N |
F048414 | Metagenome / Metatranscriptome | 148 | Y |
F061049 | Metagenome / Metatranscriptome | 132 | Y |
F063847 | Metagenome / Metatranscriptome | 129 | Y |
F077501 | Metagenome / Metatranscriptome | 117 | Y |
F092366 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0080006_116903110 | F061049 | N/A | MSVFVIKFEKDNLEISQWVLNGNEDLEKAIIEMLNIDFEFIKKIRGYKNEI* |
Ga0080006_116903111 | F042426 | N/A | MVENNVKRLMDLPLKSIYTVGQGETKSGFEVYYLFEYKSGNFSEKADNVYMVYATTILGEWITENFEKLKKAVFELEVEFRDSQYNKKIAVPVKVRKIMDKPKVSFNVEESGF* |
Ga0080006_11690312 | F092366 | AGGA | MKAIYILVIISLLMISSGLENSQASLINTNSLINEKINIHTQIYALNLTLPQVWGIYGFYNYSIDGKNYSISISNLTDSYYINLNISYNISISVNSTLYYNLSLYAYKLQDYISLNFINFKGELNISILQKEYNLTFNSSSIHFENINNFYYFWNAYGYKIIGSVIIIGLFLFFIIRLRRMR* |
Ga0080006_11690314 | F077501 | AGGGGG | MDKRILIFFILVFLLMPITINAYNITFIPENMNQTYTIFIHNQNNTFNESYQFSDKAEIVNLSKGIYYITITSSNYNNINIELNLTQNTTLELYFSSNIIGYGIQNYDYLIFTFMLIIAIFGLLIVMVYYMKGVRLK* |
Ga0080006_11690316 | F048414 | AGGAGG | MYFGKLKEGASASLFYSFLLFVFSFIILIAGLNYIWGKSALVWLPLPVWNLLINLGIFLAIIVIFIIIVRRYI* |
Ga0080006_11690319 | F063847 | AGGGGG | MRFKKYIFCYDIYNVSSDMVETHRVSIYAKSLKEAKSKLEILGYRNLYQKKKRKLSY* |
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