Scaffold Ga0080006

Basic Information
Taxon OID	3300005861 Open in IMG/M
Scaffold ID	Ga0080006_1184778 Open in IMG/M
Source Dataset Name	Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7315
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7315

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F027904	Metagenome / Metatranscriptome	193	N
F067921	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080006_118477810	F067921	GGGGG	LLETFSRIEDRVLRNGQYLLVSYSSSQHPDESSYTGFRVTKHNFTTLYYNFATQVQGFLPMAPFGGQASITTSTPYITNFKFSLQQVQNVTDMFDLSRNYDAYQVFYGISPSYLRTMLQIQQQFIAVLEQNINPSQSFVEMGIDGFQSPLFAPDPRTEFIVFSNLTYNMTLMNTATIPVLPAFNFVINRMTLEPLGKQEIKKAILAGFPVRTLGAVDSAIPVSRDNYPGLQSVTYKEVYGGGS*
Ga0080006_118477811	F027904	GGAGG	VECKYEPPTYDLFNLNNGSTLVGTSPVTLLYEGQPNATVYVPPDLTLRAKQIIIQNATTSPITVQLLAVAAPNTTLPGPIPKTPPIPVNANSAVTLDEETWGIAVRSGYGLAAVSSVANSANVFVKCYFSKGTGSPV*
Ga0080006_118477813	F011233	GGAG	VGHNCGVLAVAIPWFLPFVKGWRYHVPKLQTELLSGLPVPFTSEYTILNGEFPGYLVAAAIGTTDPNFITRGSVDGLTIIEVTVGDLRDARVYRNQMGEPNILSYATYIRGFPLPVYALSLSGDGLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVDLFKESTKQFFESVTPSSSTAQLTATPSAPPSFVANEFVSARLPVKVT*
Ga0080006_118477814	F006070	AGG	VTLYPYLVVDLPITDTNTHTYRTNPLNPLTPTQPGISLVRLGESVPSVRAFNIYVYNYANAALSVQVIANENAKNYVYGALLDGLDYQSETGYPDFNVGSPVTVPAGSLSTPSVQAVQSDFYTDAAERYLSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080006_1184778

Overview

Ecosystem & Geography

Associated Families

Sequences