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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005861 Open in IMG/M |
| Scaffold ID | Ga0080006_1185269 Open in IMG/M |
| Source Dataset Name | Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3644 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006070 | Metagenome / Metatranscriptome | 382 | N |
| F011233 | Metagenome / Metatranscriptome | 293 | N |
| F027904 | Metagenome / Metatranscriptome | 193 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0080006_11852692 | F006070 | AGG | MTLYPYLVVDLPITDTNTHTYRTDPFNPLALTQPGISLIRLGESVPPVRAFNVYVYNFANAALNVQVIANENAKNYQYGYLLDGLDYQSESSYPDFNIGSAVAVPAGSLSTPSVQAIQSDFYTGAAERYLSVALTYSTAPTTGFVRAHIDLFYQGF* |
| Ga0080006_11852693 | F011233 | N/A | LPFVKGWRYHVPKLQQELLSGLSVPFTSEYTILNGQFPGYFVSVAIGTTDPNFITRVSADGLTVIEVTAGDLRDARVYRNQMGEPNILSYGSYIRGSPLPVYALSLSGDGLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESTKEFFESITPSVVVPPAVPSQPRFVAEGVVSAKLPVKVT* |
| Ga0080006_11852695 | F027904 | N/A | VGSTAVTLLYEGQTNAVVVVPPDLTLRVKQVIIQNTTGSVVTVQLQAVTTQSGLPSPVNKTPPIPVPANSAVTLDEEAWSISVKTGYSLAAIDPGMTTGGSGSSNVFVKAYFVKGTGSPI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |