Scaffold Ga0080006

Basic Information
Taxon OID	3300005861 Open in IMG/M
Scaffold ID	Ga0080006_1188986 Open in IMG/M
Source Dataset Name	Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8336
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (55.56%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8336

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (55.56%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F047176	Metagenome / Metatranscriptome	150	N
F065947	Metagenome	127	Y
F072527	Metagenome / Metatranscriptome	121	N
F084462	Metagenome	112	N
F099550	Metagenome / Metatranscriptome	103	Y
F101506	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080006_118898610	F072527	N/A	MIWVVPPQGSTTAYRRRGYVYKQEKNSTSMSQQTNRLAELLQQAVLAFGADRVQVLQKIRQYIAQTDCTVLNVQLQQITNINMLRMLQAAGVPQCMQTTFYLQINKALRGVTP*
Ga0080006_118898612	F033508	N/A	MRRVTGSSTTQLTIPARVGYRHVLYDLFVTGPTVYAYADVSVGTRVFLRIPFQAANCVTVQHPGAKVNGKGFLWGLSDLFGAEHLPNAAEDEDINITLSAAVARIDAYYAEIKPQDVSSHSVTGGSDAKVKPFIEVLDTLVATTGNGINVLNENMPTGLGLLDLNGRVKATTQFTLLTMFADFVSSGTNFTEYSRLHIYDEDEELYTPLNHEGLFIDYTVAPGDLFMDWPGGKYFKPDQPYVFKPNHQVSLKADVPAVTGTGSTLRVALMGIRERIG*
Ga0080006_118898613	F047176	GAGG	VSAMATRIFRFYISLSAGQANNGASGNPSPFTITAPSNINRRIVEIRPWGTQPFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHEYSVVMTNNGTATGTFGVNIVVEESALATGGAAAPAAG*
Ga0080006_118898616	F084462	GAGG	MSKPNEKKTVEVLGVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPATNLTAQQIADYVKKDYAKRKGIVGMQVEV*
Ga0080006_11889862	F065947	N/A	MKMLKSNHTFSLAKIRGALKRNKRIELPCVAYGTGNLSRKIGRGYFFYDFDTQSEEEVQRFAKRVQYTFYVAYVLFRTKHGVMVVSTLTFSFEQLRKYYDQFQAEFPSDYMWEIPLFLRLSEKWDWQTGAVVSAMPQIIANPKNTDIYKLIREDMYPKKWYRTRD*
Ga0080006_11889863	F099550	GAGG	MFRLTEEIKKLLASKRKNMQIVWVPLPILDEIAQVAEKLHLALNQTIIVLTIYALREPQPQPADGAEHFLCPICLNTFNDPHVFLTHLTGDEDVEVKPHI*
Ga0080006_11889868	F101506	AGG	MNEDAVARTRISAIEQRIQTVEEQINDIRTTQLRQLERQNYVLMLLAISLVTTTVNLIVLLVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080006_1188986

Overview

Ecosystem & Geography

Associated Families

Sequences