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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005861 Open in IMG/M |
| Scaffold ID | Ga0080006_1208239 Open in IMG/M |
| Source Dataset Name | Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10095 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (35.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024140 | Metagenome / Metatranscriptome | 207 | Y |
| F067920 | Metagenome / Metatranscriptome | 125 | N |
| F084461 | Metagenome / Metatranscriptome | 112 | N |
| F101504 | Metagenome / Metatranscriptome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0080006_120823915 | F101504 | N/A | VSQASLKQIATELNNFDGILFVDDIGAINTEYMRVTTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPAVFDEIVNNTSFEANIMDKSYRYYNMRIPDNKPFQHIKIKELQHIKDKFENMKVDIDNQRVEALANNFMTFNSVVRRYKIVNNFVKLTAILNNHKTATSEDYQFVAKMLLNNIIESELLERKGFTSTFKFNVFLFNVMLMSKYYGNIFHYSKLKTYLNVSTKTIYNYAKMNNVKIDNGYIVYDNERILKVLKHVI* |
| Ga0080006_12082395 | F024140 | N/A | MNWKPTSLSHVVSILAIMITLLGINAITFYYIRYPNTTQLLFIELTNITGLIGMAYYMVSFSANEKGITIQSKPETTT* |
| Ga0080006_12082398 | F084461 | GGTGG | MSFDLGTLLKNNKATLQTENGKIVLRISFDDLVQAMYNGLPEQSKKVISITHDGKQVIISFDASILSGMVGIVAR* |
| Ga0080006_12082399 | F067920 | N/A | MPADLVFGISDQGLFGAISSVLEYILSFLKTLVEQASIYVVDFLKQLWDNPEKTITFLTLLGVVLV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |