Scaffold Ga0080006

Basic Information
Taxon OID	3300005861 Open in IMG/M
Scaffold ID	Ga0080006_1258013 Open in IMG/M
Source Dataset Name	Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10281
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10281

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (68.42%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F047176	Metagenome / Metatranscriptome	150	N
F065947	Metagenome	127	Y
F072527	Metagenome / Metatranscriptome	121	N
F084462	Metagenome	112	N
F099550	Metagenome / Metatranscriptome	103	Y
F101506	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080006_125801310	F072527	GGGGG	MCVKNSRSMSQQTNRLAELLQQAVLAFGADRVQVLQKIRQYIAQTDCTVLNVQLQQVTNINMLRMLQAAGVPQCIQATFYLQINKALRGVTP*
Ga0080006_125801312	F101506	AGG	MNEDAVARTRISAIEQRIQSVEEQISDIRATQLRQLERQNYVLMLLAISLVTTTVNLIVLLVK*
Ga0080006_125801316	F099550	GGGGG	MYRLTDEIKKLLASKRKNMQIVWVPLPILDEIAQIAEKLHLALNQTIIVLTIYALREPQPQPADGAEHFLCPICLNTFNDPHVFLTHLTGDEDVEVKPHI*
Ga0080006_125801317	F065947	N/A	MKMLKSNHTFSLAKIRSALKRNKRIELPCVAYGTGNLSRKIGRGYFFYDFDTQSEEEVQRFAKRVQYTFYVAYVLFRTKHGVMVMSTLTFSFEQLRKYYDQFQREFPSDYLWDIPLFLRLSEKWDWQTGQVVSAMPAIIANPKNIDIYKLIREDMYPKKWYRTRD*
Ga0080006_12580134	F084462	GAGG	MISVPKEKKTVEVLGVAEVPAIEPQRLGQFDTQITYRVDPLHVFTFRVPQTNMNAQQITDAVKKDYAKRKGIVGMQVEV*
Ga0080006_12580137	F047176	GAGG	VSAMATRIFRFYISLTASQANNGASGNPSPFTVTAPSGINRRIVEIRPWGTQAFEFQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYSIVITNNGSATGTFGVDVVVEESALATGGAAAPTAG*
Ga0080006_12580138	F033508	AGGTGG	LAAEAAPAPFVSSTTLRRVTGSSTTQLTIPARVGHRHVLYDLFVTGAPAYGYADVAVGTRIFIRLPFQAGNCTTLSTPGQKIQGKGFLWWFSDLFGAEHLPNAAEDEDINITLNAAALRVDAYYAEIKPQDVSSHSVTGGSDAKVKPFIEVLDTLVATTGNGINVLNENMPTGLGLLDNNGRVKATTQFTLLTAFADYTSGGTNFTEYSRLHIYDEDEELYTPLNHEGLFIDYTVAQGDLFMDFPNQRYFKPDTPYVFKPNHQVSLKADVPAVTGTGSTLRVALIGTRERIG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080006_1258013

Overview

Ecosystem & Geography

Associated Families

Sequences