Scaffold Ga0058710_1000710

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0058710_1000710

Scaffold Ga0058710_1000710

Overview

Basic Information
Taxon OID	3300005872 Open in IMG/M
Scaffold ID	Ga0058710_1000710 Open in IMG/M
Source Dataset Name	Bulk soil microbial communities from Harvard Forest, USA - 3Bulk_unsorted metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	925
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Bulk Soil → Rhizosphere And Bulk Soil Microbial Communities From Harvard Forest, Usa

Source Dataset Sampling Location
Location Name	Harvard Forest, Massachusetts, USA
Coordinates	Lat. (^o)	42.5502	Long. (^o)	-72.1737	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027788	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058710_10007101	F027788	GGAG	MTTVGSSAADALLGAVAVTLLVVMYGQWLYRSRRLRRCQERLRVVRELIADGERTKTAYADASDASAAHGGFLQRCDSSLRDQFGDSFARRIAAYSEFEWIQPASLISNEQVFAWYDTERRLAGLRELLYEALLDLGEASLDLGSLVE*

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