NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080455_1095002

Scaffold Ga0080455_1095002


Overview

Basic Information
Taxon OID3300005882 Open in IMG/M
Scaffold IDGa0080455_1095002 Open in IMG/M
Source Dataset NameHydrocarbon microbial community from Halfdan Field MHF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)796
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameHalfdan Field, North Sea, Denmark
CoordinatesLat. (o)55.49Long. (o)7.42Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024691Metagenome204Y
F041530Metagenome159N
F047350Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0080455_10950021F047350N/AVAIVLFSAIMVRLENLNRRISRLEGKMVILCDTMRAFKEIRGK*
Ga0080455_10950022F024691GGAMRYHAGFQRDKRKIKTNLPLVEIKASKRKSTLHDRVLVILSTLIRNFSERVNVDHVKPPIALDKSLKLTDERGKKYDIAFIYEGELFLIEVKRCRRWQ*
Ga0080455_10950023F041530AGGMAIERMERKQKGVITQLSGKLKNVEFRTRRDGRIELGARRIPKQPGTPAQQRVRKAYGKIYQKWTKLSEEEKAYWNNLGKPEKLSGWNVFLRENMKAQTFKVVLDCSGMSTTYENYTLIMFLADFPDLYNALNDDLTNI
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