NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075277_1013132

Scaffold Ga0075277_1013132


Overview

Basic Information
Taxon OID3300005895 Open in IMG/M
Scaffold IDGa0075277_1013132 Open in IMG/M
Source Dataset NameRice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_101
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1102
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: Twitchell Island, California
CoordinatesLat. (o)38.1087Long. (o)-121.653Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062651Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0075277_10131321F062651N/APNPRSWDQGLDSELSPQIAPVGPIETDQTAYDFIRRREREHALGTKATAAELDEVINASSQVLASALALPLFKAGVYLGQPRLIDRGCNAARRVTHSALRASGNVDAVLQACGTLTSGRQTSSNDGCGEGQQKLREAYALLAAEKSQDAGHTAAEGVRLLRDRCSKMSAPLRTPVDPSTRGFLIVWVLHANDAPPVTFLAGEPVPNTAESINDAFLRGVQAARPVAHNP*
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