Basic Information | |
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Taxon OID | 3300005901 Open in IMG/M |
Scaffold ID | Ga0075274_1002723 Open in IMG/M |
Source Dataset Name | Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_201 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1915 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Twitchell Island, California | |||||||
Coordinates | Lat. (o) | 38.1087 | Long. (o) | -121.653 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008145 | Metagenome / Metatranscriptome | 338 | Y |
F028279 | Metagenome | 192 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075274_10027231 | F008145 | GGAGG | MAVRGDDVAASIDTHVRESIEKMVGEIRSSVEDVREAVDQQLKAALQSVQADVNAITFLPHIKKVIGDLEKEMEPEASPAAADASRLKAAIKSVEHGKSQVDILNALLEQAVQFGSRAALLILRGETFSGWKGMGFSSHGGNDETVKRFNAAPGLVPQLDQVLRHEHVVVWDGNNLSSRLGVSGSVKAILVPMVIKDKVAAAVFVDA |
Ga0075274_10027234 | F028279 | GGA | MGKVKALKKRADSVLEEVFRSLFEEIDTEKIRADVDVLKAGAPEFEAVDHAHLLVRRTALRCAAAGAVTGIPSGLLAVG |
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