NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075122_10000514

Scaffold Ga0075122_10000514


Overview

Basic Information
Taxon OID3300005915 Open in IMG/M
Scaffold IDGa0075122_10000514 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30333
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (54.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067647Metagenome125Y
F070872Metagenome122Y
F091388Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0075122_1000051411F091388GGAGMESKKELRLKQKASFYFNEKLICHITKEPKGFINGWFRSDIIDDMYYLFEDHRWPDEERKLFLLDIFDINDYKELVE*
Ga0075122_1000051426F067647GGAGGMAISPPTNVTTASQMVGWLNVSTGMWLFQGILCAVFIISLVSMLKNPINTASKSFSAAAFITMIIAIFARTLNYIPTSFMTIWIVLVGLSAIWMYVEGTQ*
Ga0075122_100005144F070872N/AMKYMKTQVKKWGDSKVIVLSSDFLKYMKLKEDDWVDISDIIKDDNK*
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