Scaffold Ga0075121_1084347

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075121_1084347

Scaffold Ga0075121_1084347

Overview

Basic Information
Taxon OID	3300005932 Open in IMG/M
Scaffold ID	Ga0075121_1084347 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1063
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010230	Metagenome	306	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075121_10843471	F010230	N/A	QYCQVEVKLVPLLVSINGNELRLLQLYQVEVKLVPLLVSINGNELRLLQLYQVEVKLVPSLVSINGKELRLLQYRQVKLKLVPLLVSINGNELRLLHSPQVESKLVPLLVSINGNELRLLQYRQVK*
Ga0075121_10843472	F010230	GGA	LQPSQVWLKVVPLLVSINGKELRLLQYRQVKLKLVPLLVSINGKELRLLQLFQVALNLVPLLVSINGNELRLLHSPQVESKLVPLLVSINGNELRLLQNCQVAVKLMPLLVSINGNELRLLQYRQVK*

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