NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075118_10008335

Scaffold Ga0075118_10008335


Overview

Basic Information
Taxon OID3300005933 Open in IMG/M
Scaffold IDGa0075118_10008335 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4862
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010625Metagenome / Metatranscriptome301Y
F019396Metagenome230Y
F070579Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0075118_100083351F019396N/ATNGLPCMAQQTYEPLVSSDGKTFCKNYSFPNEYQYMNSADRPLYTTEVVNWFWSNELMWIEHFKDKPYAPEILDIDLINKRIYIKWYTESCNQIIYSGKDWPQQHWRKQIRDIIVDQYNEGVYKLTMYPHCHYISDDGNMRAIDWYGCVPVNDPYIEEKYMQGIIHETAQFRLDETGKPLDGKLNLEMMFERSLSTHVMWGNHNMNYIYDEIFTRVTNA*
Ga0075118_100083355F070579N/AVKFYITGSTRGLGKYLAEHFNCECLDRPIDLNMDINSVADSIEEGSTVILNAHASQLEYVHKLKDKCKLVICGSVAAVNADPTMTEYSEQKYNLEKTVTKLALESKYPILYLRLTSSSYRNEHLIAKSIQFWIDTPDVTFIGYNINE*
Ga0075118_100083358F010625N/ARNKFPDMIPNITQIDMYSKKLYMEVQGVDFWQQTLDNNCTYDNILPNWREQMLDIFRAHKSLGIYKYSLHPSSYFVVDGKLKSINYFFCYRDIDPMISLRSVMSHISEDRQADLFPKMSAMGLDVDMPTPHKQIQMLAFESFKTNFPDDVMEEAKAIYA*
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