NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081455_10000007

Scaffold Ga0081455_10000007


Overview

Basic Information
Taxon OID3300005937 Open in IMG/M
Scaffold IDGa0081455_10000007 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)269394
Total Scaffold Genes270 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)205 (75.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017145Metagenome / Metatranscriptome242Y
F020731Metagenome / Metatranscriptome222Y
F050353Metagenome / Metatranscriptome145N
F060880Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0081455_10000007142F060880GGAGGMRSSVDFRKRQRRRADLHRHSEAAVATIWLVFYVVGIAVVLSTPIISRALEVAAR*
Ga0081455_1000000731F017145AGGMAARTSSRRRWMLRDIPRTYVLLVWLAFGTAILIYSTDWHPSGWTALRQEAAAPKPPVSVTEQYTGSLIIVPTRGEDCRQMMLDNRTGRMWDIGIVNCYQAVSRSEKDQRGGMSSLRINAIGKAFNRRDE*
Ga0081455_1000000778F020731GGAGMPALGFLAVAGLALIALLFVADAALEKSDSPVIATSQRSGLPDSALHSDKTNILTIAPAPEPDMALPAIRDAQPKPVPQDTLRVHPAARAARAEAPPQNTYGAPQMNYQRQYQFQHQYQNRRIQEFDRFSIKGL*
Ga0081455_1000000794F050353AGGAGGMRRALNVALVVAGVLVNVITSRSTTVANSRVAEWPVHNGTIVYGLHVALPTHMKSFPPELVPLP*
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